J5_7MPJ_005
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GGUUUAG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7MPJ|1|A1|A|2404, 7MPJ|1|A1|A|2817, 7MPJ|1|A1|C|2821, 7MPJ|1|A1|G|2874, 7MPJ|1|A1|U|2875, 7MPJ|1|A1|U|2978, 7MPJ|1|A1|U|2979
- QA status
- Modified nucleotides: OMG, 5MC, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MPJ|1|A1|A|2399
7MPJ|1|A1|G|2400
7MPJ|1|A1|A|2401
7MPJ|1|A1|A|2402
7MPJ|1|A1|G|2403
7MPJ|1|A1|A|2404
7MPJ|1|A1|C|2405
7MPJ|1|A1|C|2406
*
7MPJ|1|A1|OMG|2815
7MPJ|1|A1|G|2816
7MPJ|1|A1|A|2817
7MPJ|1|A1|U|2818
7MPJ|1|A1|A|2819
7MPJ|1|A1|A|2820
7MPJ|1|A1|C|2821
7MPJ|1|A1|U|2822
7MPJ|1|A1|G|2823
*
7MPJ|1|A1|C|2867
7MPJ|1|A1|U|2868
7MPJ|1|A1|U|2869
7MPJ|1|A1|5MC|2870
7MPJ|1|A1|G|2871
7MPJ|1|A1|A|2872
7MPJ|1|A1|U|2873
7MPJ|1|A1|G|2874
7MPJ|1|A1|U|2875
7MPJ|1|A1|C|2876
*
7MPJ|1|A1|G|2951
7MPJ|1|A1|G|2952
7MPJ|1|A1|U|2953
7MPJ|1|A1|U|2954
7MPJ|1|A1|U|2955
7MPJ|1|A1|A|2956
7MPJ|1|A1|G|2957
*
7MPJ|1|A1|PSU|2975
7MPJ|1|A1|A|2976
7MPJ|1|A1|G|2977
7MPJ|1|A1|U|2978
7MPJ|1|A1|U|2979
7MPJ|1|A1|U|2980
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AB
- 60S ribosomal protein L3
- Chain AC
- 60S ribosomal protein L4-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain Ab
- 60S ribosomal protein L29
Coloring options: