J5_7MPJ_009
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
- Length
- 41 nucleotides
- Bulged bases
- 7MPJ|1|B5|U|128, 7MPJ|1|B5|C|131, 7MPJ|1|B5|U|132, 7MPJ|1|B5|A|135, 7MPJ|1|B5|U|137, 7MPJ|1|B5|A|140, 7MPJ|1|B5|U|141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MPJ|1|B5|A|124
7MPJ|1|B5|U|125
7MPJ|1|B5|A|126
7MPJ|1|B5|G|127
7MPJ|1|B5|U|128
7MPJ|1|B5|U|129
7MPJ|1|B5|C|130
7MPJ|1|B5|C|131
7MPJ|1|B5|U|132
7MPJ|1|B5|U|133
7MPJ|1|B5|U|134
7MPJ|1|B5|A|135
7MPJ|1|B5|C|136
7MPJ|1|B5|U|137
7MPJ|1|B5|A|138
7MPJ|1|B5|C|139
7MPJ|1|B5|A|140
7MPJ|1|B5|U|141
7MPJ|1|B5|G|142
7MPJ|1|B5|G|143
*
7MPJ|1|B5|C|172
7MPJ|1|B5|A|173
7MPJ|1|B5|U|174
7MPJ|1|B5|G|175
7MPJ|1|B5|C|176
7MPJ|1|B5|U|177
7MPJ|1|B5|U|178
7MPJ|1|B5|A|179
7MPJ|1|B5|A|180
7MPJ|1|B5|A|181
7MPJ|1|B5|A|182
*
7MPJ|1|B5|U|203
7MPJ|1|B5|G|204
*
7MPJ|1|B5|C|263
7MPJ|1|B5|G|264
7MPJ|1|B5|A|265
*
7MPJ|1|B5|U|289
7MPJ|1|B5|G|290
7MPJ|1|B5|G|291
7MPJ|1|B5|U|292
7MPJ|1|B5|U|293
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BG
- 40S ribosomal protein S6-A
- Chain BI
- 40S ribosomal protein S8-A
Coloring options: