J5_7MPJ_011
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACUUUG*UUUCCUUCU*AGGACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 41 nucleotides
- Bulged bases
- 7MPJ|1|B5|U|639, 7MPJ|1|B5|U|694, 7MPJ|1|B5|C|696, 7MPJ|1|B5|C|697, 7MPJ|1|B5|A|740, 7MPJ|1|B5|U|742, 7MPJ|1|B5|U|813, 7MPJ|1|B5|G|815, 7MPJ|1|B5|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MPJ|1|B5|A|636
7MPJ|1|B5|C|637
7MPJ|1|B5|U|638
7MPJ|1|B5|U|639
7MPJ|1|B5|U|640
7MPJ|1|B5|G|641
*
7MPJ|1|B5|U|693
7MPJ|1|B5|U|694
7MPJ|1|B5|U|695
7MPJ|1|B5|C|696
7MPJ|1|B5|C|697
7MPJ|1|B5|U|698
7MPJ|1|B5|U|699
7MPJ|1|B5|C|700
7MPJ|1|B5|U|701
*
7MPJ|1|B5|A|737
7MPJ|1|B5|G|738
7MPJ|1|B5|G|739
7MPJ|1|B5|A|740
7MPJ|1|B5|C|741
7MPJ|1|B5|U|742
7MPJ|1|B5|U|743
7MPJ|1|B5|U|744
*
7MPJ|1|B5|A|807
7MPJ|1|B5|U|808
7MPJ|1|B5|A|809
7MPJ|1|B5|G|810
7MPJ|1|B5|A|811
7MPJ|1|B5|A|812
7MPJ|1|B5|U|813
7MPJ|1|B5|A|814
7MPJ|1|B5|G|815
7MPJ|1|B5|G|816
7MPJ|1|B5|A|817
*
7MPJ|1|B5|U|854
7MPJ|1|B5|A|855
7MPJ|1|B5|A|856
7MPJ|1|B5|U|857
7MPJ|1|B5|G|858
7MPJ|1|B5|A|859
7MPJ|1|B5|U|860
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- 40S ribosomal protein S22-A
Coloring options: