J5_7MSH_011

3D structure

PDB id

7MSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CGAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7MSH_011 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1281

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7MSH|1|a|C|39
7MSH|1|a|U|40
7MSH|1|a|G|41
7MSH|1|a|G|42
*
7MSH|1|a|C|402
7MSH|1|a|G|403
7MSH|1|a|U|404
7MSH|1|a|G|405
*
7MSH|1|a|C|435
7MSH|1|a|U|436
7MSH|1|a|U|437
7MSH|1|a|U|438
7MSH|1|a|C|439
*
7MSH|1|a|G|488
7MSH|1|a|A|489
7MSH|1|a|A|490
7MSH|1|a|G|491
*
7MSH|1|a|C|536
7MSH|1|a|G|537
7MSH|1|a|A|538
7MSH|1|a|G|539

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12