J5_7MSZ_011

3D structure

PDB id

7MSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

7MSZ|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7MSZ_011 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.104

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7MSZ|1|A|C|47
7MSZ|1|A|G|48
7MSZ|1|A|A|49
7MSZ|1|A|U|50
7MSZ|1|A|G|51
7MSZ|1|A|A|52
7MSZ|1|A|A|53
7MSZ|1|A|G|54
*
7MSZ|1|A|C|116
7MSZ|1|A|G|117
7MSZ|1|A|A|118
7MSZ|1|A|A|119
7MSZ|1|A|U|120
7MSZ|1|A|G|121
*
7MSZ|1|A|C|130
7MSZ|1|A|A|131
*
7MSZ|1|A|U|150
7MSZ|1|A|A|151
7MSZ|1|A|C|152
*
7MSZ|1|A|G|178
7MSZ|1|A|A|179
7MSZ|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23