J5_7N1P_002

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7N1P_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0374

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7N1P|1|16|C|36
7N1P|1|16|U|37
7N1P|1|16|G|38
7N1P|1|16|G|39
*
7N1P|1|16|C|403
7N1P|1|16|G|404
7N1P|1|16|U|405
7N1P|1|16|G|406
*
7N1P|1|16|C|436
7N1P|1|16|U|437
7N1P|1|16|U|438
7N1P|1|16|U|439
7N1P|1|16|C|440
7N1P|1|16|A|441
7N1P|1|16|G|442
*
7N1P|1|16|C|492
7N1P|1|16|A|493
7N1P|1|16|G|494
7N1P|1|16|A|495
7N1P|1|16|A|496
7N1P|1|16|G|497
7N1P|1|16|A|498
7N1P|1|16|A|499
7N1P|1|16|G|500
*
7N1P|1|16|C|545
7N1P|1|16|A|546
7N1P|1|16|A|547
7N1P|1|16|G|548

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SD

30S ribosomal protein S4

Chain SL

30S ribosomal protein S12