J5_7N1P_004

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7N1P|1|23|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7N1P_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0418

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7N1P|1|23|C|47
7N1P|1|23|G|48
7N1P|1|23|A|49
7N1P|1|23|U|50
7N1P|1|23|G|51
7N1P|1|23|A|52
7N1P|1|23|A|53
7N1P|1|23|G|54
*
7N1P|1|23|C|116
7N1P|1|23|G|117
7N1P|1|23|A|118
7N1P|1|23|A|119
7N1P|1|23|U|120
7N1P|1|23|G|121
*
7N1P|1|23|C|130
7N1P|1|23|A|131
*
7N1P|1|23|U|148
7N1P|1|23|A|149
7N1P|1|23|U|150
*
7N1P|1|23|A|176
7N1P|1|23|G|177
7N1P|1|23|G|178

Current chains

Chain 23

23S rRNA

Nearby chains

Chain Lh

50S ribosomal protein L34