J5_7N2U_001

3D structure

PDB id

7N2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7N2U_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0751

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7N2U|1|16|C|36
7N2U|1|16|U|37
7N2U|1|16|G|38
7N2U|1|16|G|39
*
7N2U|1|16|C|403
7N2U|1|16|G|404
7N2U|1|16|U|405
7N2U|1|16|G|406
*
7N2U|1|16|C|436
7N2U|1|16|U|437
7N2U|1|16|U|438
7N2U|1|16|U|439
7N2U|1|16|C|440
*
7N2U|1|16|G|497
7N2U|1|16|A|498
7N2U|1|16|A|499
7N2U|1|16|G|500
*
7N2U|1|16|C|545
7N2U|1|16|A|546
7N2U|1|16|A|547
7N2U|1|16|G|548

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SD

30S ribosomal protein S4

Chain SL

30S ribosomal protein S12