3D structure

PDB id
7N2U (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.53 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
7N2U|1|16|A|60, 7N2U|1|16|A|109, 7N2U|1|16|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7N2U_003 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.0883
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7N2U|1|16|C|58
7N2U|1|16|A|59
7N2U|1|16|A|60
7N2U|1|16|G|61
*
7N2U|1|16|C|106
7N2U|1|16|G|107
7N2U|1|16|G|108
7N2U|1|16|A|109
7N2U|1|16|C|110
7N2U|1|16|G|111
7N2U|1|16|G|112
7N2U|1|16|G|113
*
7N2U|1|16|C|314
7N2U|1|16|A|315
7N2U|1|16|C|316
*
7N2U|1|16|G|337
7N2U|1|16|A|338
7N2U|1|16|C|339
*
7N2U|1|16|G|350
7N2U|1|16|G|351
7N2U|1|16|C|352
7N2U|1|16|A|353
7N2U|1|16|G|354

Current chains

Chain 16
16S rRNA

Nearby chains

Chain LN
50S ribosomal protein L14
Chain SP
30S ribosomal protein S16
Chain ST
30S ribosomal protein S20

Coloring options:


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