J5_7N2V_002

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7N2V_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0593

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7N2V|1|16|C|36
7N2V|1|16|U|37
7N2V|1|16|G|38
7N2V|1|16|G|39
*
7N2V|1|16|C|403
7N2V|1|16|G|404
7N2V|1|16|U|405
7N2V|1|16|G|406
*
7N2V|1|16|C|436
7N2V|1|16|U|437
7N2V|1|16|U|438
7N2V|1|16|U|439
7N2V|1|16|C|440
7N2V|1|16|A|441
7N2V|1|16|G|442
*
7N2V|1|16|C|492
7N2V|1|16|A|493
7N2V|1|16|G|494
7N2V|1|16|A|495
7N2V|1|16|A|496
7N2V|1|16|G|497
7N2V|1|16|A|498
7N2V|1|16|A|499
7N2V|1|16|G|500
*
7N2V|1|16|C|545
7N2V|1|16|A|546
7N2V|1|16|A|547
7N2V|1|16|G|548

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SD

30S ribosomal protein S4

Chain SL

30S ribosomal protein S12