J5_7N30_002

3D structure

PDB id

7N30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7N30_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.042

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7N30|1|16|C|36
7N30|1|16|U|37
7N30|1|16|G|38
7N30|1|16|G|39
*
7N30|1|16|C|403
7N30|1|16|G|404
7N30|1|16|U|405
7N30|1|16|G|406
*
7N30|1|16|C|436
7N30|1|16|U|437
7N30|1|16|U|438
7N30|1|16|U|439
7N30|1|16|C|440
7N30|1|16|A|441
7N30|1|16|G|442
*
7N30|1|16|C|492
7N30|1|16|A|493
7N30|1|16|G|494
7N30|1|16|A|495
7N30|1|16|A|496
7N30|1|16|G|497
7N30|1|16|A|498
7N30|1|16|A|499
7N30|1|16|G|500
*
7N30|1|16|C|545
7N30|1|16|A|546
7N30|1|16|A|547
7N30|1|16|G|548

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SD

30S ribosomal protein S4

Chain SL

30S ribosomal protein S12