J5_7N8B_006
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- U(OMU)GA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7N8B|1|A1|G|2418, 7N8B|1|A1|A|2799, 7N8B|1|A1|G|2800, 7N8B|1|A1|A|2801, 7N8B|1|A1|A|2802
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7N8B_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2849
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7N8B|1|A1|U|2416
7N8B|1|A1|OMU|2417
7N8B|1|A1|G|2418
7N8B|1|A1|A|2419
*
7N8B|1|A1|U|2611
7N8B|1|A1|U|2612
7N8B|1|A1|U|2613
7N8B|1|A1|G|2614
*
7N8B|1|A1|C|2627
7N8B|1|A1|A|2628
*
7N8B|1|A1|U|2650
7N8B|1|A1|G|2651
*
7N8B|1|A1|C|2798
7N8B|1|A1|A|2799
7N8B|1|A1|G|2800
7N8B|1|A1|A|2801
7N8B|1|A1|A|2802
7N8B|1|A1|A|2803
7N8B|1|A1|A|2804
Current chains
- Chain A1
- 25S
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- 60S ribosomal protein L29
- Chain Ao
- 60S ribosomal protein L42-A
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