J5_7N8B_007

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)ACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|B5|C|31
7N8B|1|B5|U|32
7N8B|1|B5|U|33
7N8B|1|B5|G|34
7N8B|1|B5|U|35
*
7N8B|1|B5|A|473
7N8B|1|B5|A|474
7N8B|1|B5|A|475
7N8B|1|B5|U|476
7N8B|1|B5|A|477
7N8B|1|B5|A|478
7N8B|1|B5|C|479
*
7N8B|1|B5|G|509
7N8B|1|B5|G|510
7N8B|1|B5|A|511
7N8B|1|B5|A|512
7N8B|1|B5|U|513
7N8B|1|B5|G|514
7N8B|1|B5|A|515
7N8B|1|B5|G|516
*
7N8B|1|B5|C|536
7N8B|1|B5|G|537
7N8B|1|B5|A|538
7N8B|1|B5|G|539
7N8B|1|B5|G|540
7N8B|1|B5|A2M|541
7N8B|1|B5|A|542
7N8B|1|B5|C|543
7N8B|1|B5|A|544
7N8B|1|B5|A|545
7N8B|1|B5|U|546
*
7N8B|1|B5|A|592
7N8B|1|B5|U|593
7N8B|1|B5|A|594
7N8B|1|B5|G|595

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A