Loop J5_7N8B

3D structure

PDB id: 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.05 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
Length: 41 nucleotides
Bulged bases: 7N8B|1|B5|U|128, 7N8B|1|B5|C|130, 7N8B|1|B5|C|131, 7N8B|1|B5|U|132, 7N8B|1|B5|U|133, 7N8B|1|B5|U|134, 7N8B|1|B5|A|135, 7N8B|1|B5|C|136, 7N8B|1|B5|U|137, 7N8B|1|B5|A|140, 7N8B|1|B5|U|141, 7N8B|1|B5|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7N8B|1|B5|A|124
7N8B|1|B5|U|125
7N8B|1|B5|A|126
7N8B|1|B5|G|127
7N8B|1|B5|U|128
7N8B|1|B5|U|129
7N8B|1|B5|C|130
7N8B|1|B5|C|131
7N8B|1|B5|U|132
7N8B|1|B5|U|133
7N8B|1|B5|U|134
7N8B|1|B5|A|135
7N8B|1|B5|C|136
7N8B|1|B5|U|137
7N8B|1|B5|A|138
7N8B|1|B5|C|139
7N8B|1|B5|A|140
7N8B|1|B5|U|141
7N8B|1|B5|G|142
7N8B|1|B5|G|143
*
7N8B|1|B5|C|172
7N8B|1|B5|A|173
7N8B|1|B5|U|174
7N8B|1|B5|G|175
7N8B|1|B5|C|176
7N8B|1|B5|U|177
7N8B|1|B5|U|178
7N8B|1|B5|A|179
7N8B|1|B5|A|180
7N8B|1|B5|A|181
7N8B|1|B5|A|182
*
7N8B|1|B5|U|203
7N8B|1|B5|G|204
*
7N8B|1|B5|C|263
7N8B|1|B5|G|264
7N8B|1|B5|A|265
*
7N8B|1|B5|U|289
7N8B|1|B5|G|290
7N8B|1|B5|G|291
7N8B|1|B5|U|292
7N8B|1|B5|U|293

Current chains

Chain B5: 18S RIBOSOMAL RNA

Nearby chains

Chain BE: 40S ribosomal protein S4-A
Chain BG: 40S ribosomal protein S6-A
Chain BI: 40S ribosomal protein S8-A

J5_7N8B_009