J5_7N8B_011
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- ACUUUG*UUUCCUUCU*GGACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 40 nucleotides
- Bulged bases
- 7N8B|1|B5|U|639, 7N8B|1|B5|U|694, 7N8B|1|B5|A|740, 7N8B|1|B5|U|742, 7N8B|1|B5|U|813, 7N8B|1|B5|G|815, 7N8B|1|B5|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7N8B|1|B5|A|636
7N8B|1|B5|C|637
7N8B|1|B5|U|638
7N8B|1|B5|U|639
7N8B|1|B5|U|640
7N8B|1|B5|G|641
*
7N8B|1|B5|U|693
7N8B|1|B5|U|694
7N8B|1|B5|U|695
7N8B|1|B5|C|696
7N8B|1|B5|C|697
7N8B|1|B5|U|698
7N8B|1|B5|U|699
7N8B|1|B5|C|700
7N8B|1|B5|U|701
*
7N8B|1|B5|G|738
7N8B|1|B5|G|739
7N8B|1|B5|A|740
7N8B|1|B5|C|741
7N8B|1|B5|U|742
7N8B|1|B5|U|743
7N8B|1|B5|U|744
*
7N8B|1|B5|A|807
7N8B|1|B5|U|808
7N8B|1|B5|A|809
7N8B|1|B5|G|810
7N8B|1|B5|A|811
7N8B|1|B5|A|812
7N8B|1|B5|U|813
7N8B|1|B5|A|814
7N8B|1|B5|G|815
7N8B|1|B5|G|816
7N8B|1|B5|A|817
*
7N8B|1|B5|U|854
7N8B|1|B5|A|855
7N8B|1|B5|A|856
7N8B|1|B5|U|857
7N8B|1|B5|G|858
7N8B|1|B5|A|859
7N8B|1|B5|U|860
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- 40S ribosomal protein S22-A
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