J5_7NBU_004

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7NBU|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NBU_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.088

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7NBU|1|a|C|47
7NBU|1|a|G|48
7NBU|1|a|A|49
7NBU|1|a|U|50
7NBU|1|a|G|51
7NBU|1|a|A|52
7NBU|1|a|A|53
7NBU|1|a|G|54
*
7NBU|1|a|C|116
7NBU|1|a|G|117
7NBU|1|a|A|118
7NBU|1|a|A|119
7NBU|1|a|U|120
7NBU|1|a|G|121
*
7NBU|1|a|C|130
7NBU|1|a|A|131
*
7NBU|1|a|U|148
7NBU|1|a|A|149
7NBU|1|a|U|150
*
7NBU|1|a|A|176
7NBU|1|a|G|177
7NBU|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34