J5_7NHK_001

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

7NHK|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NHK_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1012

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7NHK|1|A|C|47
7NHK|1|A|G|48
7NHK|1|A|A|49
7NHK|1|A|U|50
7NHK|1|A|G|51
7NHK|1|A|A|52
7NHK|1|A|A|53
7NHK|1|A|G|54
*
7NHK|1|A|C|115
7NHK|1|A|G|116
7NHK|1|A|A|117
7NHK|1|A|A|118
7NHK|1|A|U|119
7NHK|1|A|G|120
*
7NHK|1|A|C|129
7NHK|1|A|A|130
*
7NHK|1|A|U|149
7NHK|1|A|A|150
7NHK|1|A|C|151
*
7NHK|1|A|G|177
7NHK|1|A|A|178
7NHK|1|A|G|179

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain W

50S ribosomal protein L23