J5_7NHK_006
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUCAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 7NHK|1|A|A|2075, 7NHK|1|A|A|2461, 7NHK|1|A|U|2598, 7NHK|1|A|U|2622
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NHK|1|A|G|2070
7NHK|1|A|A|2071
7NHK|1|A|A|2072
7NHK|1|A|A|2073
7NHK|1|A|G|2074
7NHK|1|A|A|2075
7NHK|1|A|C|2076
7NHK|1|A|C|2077
*
7NHK|1|A|G|2459
7NHK|1|A|G|2460
7NHK|1|A|A|2461
7NHK|1|A|U|2462
7NHK|1|A|A|2463
7NHK|1|A|A|2464
7NHK|1|A|C|2465
7NHK|1|A|A|2466
7NHK|1|A|G|2467
*
7NHK|1|A|C|2511
7NHK|1|A|C|2512
7NHK|1|A|U|2513
7NHK|1|A|C|2514
7NHK|1|A|G|2515
7NHK|1|A|A|2516
7NHK|1|A|U|2517
7NHK|1|A|G|2518
7NHK|1|A|U|2519
7NHK|1|A|C|2520
*
7NHK|1|A|G|2595
7NHK|1|A|G|2596
7NHK|1|A|U|2597
7NHK|1|A|U|2598
7NHK|1|A|C|2599
7NHK|1|A|A|2600
7NHK|1|A|G|2601
*
7NHK|1|A|C|2619
7NHK|1|A|G|2620
7NHK|1|A|G|2621
7NHK|1|A|U|2622
7NHK|1|A|C|2623
7NHK|1|A|C|2624
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- ABC-F type ribosomal protection protein Lsa(A)
- Chain 4
- 50S ribosomal protein L32
- Chain G
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L22
Coloring options: