J5_7NHL_002

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

7NHL|1|A|U|301, 7NHL|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NHL|1|A|C|271
7NHL|1|A|C|272
7NHL|1|A|A|273
7NHL|1|A|A|274
7NHL|1|A|A|275
7NHL|1|A|C|276
*
7NHL|1|A|G|295
7NHL|1|A|G|296
7NHL|1|A|G|297
7NHL|1|A|U|298
7NHL|1|A|U|299
7NHL|1|A|G|300
7NHL|1|A|U|301
7NHL|1|A|A|302
*
7NHL|1|A|U|415
7NHL|1|A|G|416
7NHL|1|A|A|417
7NHL|1|A|G|418
7NHL|1|A|U|419
7NHL|1|A|A|420
7NHL|1|A|C|421
*
7NHL|1|A|G|445
7NHL|1|A|G|446
7NHL|1|A|A|447
7NHL|1|A|A|448
7NHL|1|A|U|449
7NHL|1|A|C|450
7NHL|1|A|U|451
7NHL|1|A|G|452
*
7NHL|1|A|U|467
7NHL|1|A|A|468
7NHL|1|A|A|469
7NHL|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28