J5_7NHL_008

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUG*CUGUUA*UCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NHL|1|a|C|37
7NHL|1|a|U|38
7NHL|1|a|G|39
7NHL|1|a|G|40
*
7NHL|1|a|C|411
7NHL|1|a|G|412
7NHL|1|a|U|413
7NHL|1|a|G|414
*
7NHL|1|a|C|444
7NHL|1|a|U|445
7NHL|1|a|G|446
7NHL|1|a|U|447
7NHL|1|a|U|448
7NHL|1|a|A|449
*
7NHL|1|a|U|501
7NHL|1|a|C|502
7NHL|1|a|A|503
7NHL|1|a|G|504
7NHL|1|a|A|505
7NHL|1|a|A|506
7NHL|1|a|A|507
7NHL|1|a|G|508
*
7NHL|1|a|C|553
7NHL|1|a|A|554
7NHL|1|a|A|555
7NHL|1|a|G|556

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain m

30S ribosomal protein S12