J5_7NHM_001

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7NHM|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NHM_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1112

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7NHM|1|A|C|47
7NHM|1|A|G|48
7NHM|1|A|A|49
7NHM|1|A|U|50
7NHM|1|A|G|51
7NHM|1|A|A|52
7NHM|1|A|A|53
7NHM|1|A|G|54
*
7NHM|1|A|C|115
7NHM|1|A|G|116
7NHM|1|A|A|117
7NHM|1|A|A|118
7NHM|1|A|U|119
7NHM|1|A|G|120
*
7NHM|1|A|C|129
7NHM|1|A|A|130
*
7NHM|1|A|U|149
7NHM|1|A|A|150
7NHM|1|A|U|151
*
7NHM|1|A|A|178
7NHM|1|A|A|179
7NHM|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23