J5_7NHM_008

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUG*CUGUUA*UCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NHM|1|a|C|37
7NHM|1|a|U|38
7NHM|1|a|G|39
7NHM|1|a|G|40
*
7NHM|1|a|C|411
7NHM|1|a|G|412
7NHM|1|a|U|413
7NHM|1|a|G|414
*
7NHM|1|a|C|444
7NHM|1|a|U|445
7NHM|1|a|G|446
7NHM|1|a|U|447
7NHM|1|a|U|448
7NHM|1|a|A|449
*
7NHM|1|a|U|501
7NHM|1|a|C|502
7NHM|1|a|A|503
7NHM|1|a|G|504
7NHM|1|a|A|505
7NHM|1|a|A|506
7NHM|1|a|A|507
7NHM|1|a|G|508
*
7NHM|1|a|C|553
7NHM|1|a|A|554
7NHM|1|a|A|555
7NHM|1|a|G|556

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain m

30S ribosomal protein S12