J5_7NHN_001

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7NHN|1|A|A|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NHN_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0731

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7NHN|1|A|C|47
7NHN|1|A|G|48
7NHN|1|A|A|49
7NHN|1|A|A|50
7NHN|1|A|G|51
7NHN|1|A|A|52
7NHN|1|A|A|53
7NHN|1|A|G|54
*
7NHN|1|A|C|115
7NHN|1|A|G|116
7NHN|1|A|A|117
7NHN|1|A|A|118
7NHN|1|A|U|119
7NHN|1|A|G|120
*
7NHN|1|A|C|129
7NHN|1|A|A|130
*
7NHN|1|A|U|149
7NHN|1|A|A|150
7NHN|1|A|U|151
*
7NHN|1|A|A|177
7NHN|1|A|A|178
7NHN|1|A|G|179

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23