J5_7NHN_004
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7NHN|1|A|U|1300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NHN_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.0961
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7NHN|1|A|C|627
7NHN|1|A|G|628
7NHN|1|A|A|629
7NHN|1|A|G|630
7NHN|1|A|U|631
7NHN|1|A|U|632
*
7NHN|1|A|A|714
7NHN|1|A|G|715
7NHN|1|A|A|716
7NHN|1|A|C|717
*
7NHN|1|A|G|855
7NHN|1|A|U|856
7NHN|1|A|U|857
7NHN|1|A|C|858
*
7NHN|1|A|G|1241
7NHN|1|A|C|1242
*
7NHN|1|A|G|1295
7NHN|1|A|A|1296
7NHN|1|A|G|1297
7NHN|1|A|A|1298
7NHN|1|A|A|1299
7NHN|1|A|U|1300
7NHN|1|A|G|1301
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
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