J5_7NHN_009
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7NHN|1|a|A|109, 7NHN|1|a|C|362
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NHN_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1067
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NHN|1|a|C|60
7NHN|1|a|A|61
7NHN|1|a|A|62
7NHN|1|a|G|63
*
7NHN|1|a|C|106
7NHN|1|a|G|107
7NHN|1|a|G|108
7NHN|1|a|A|109
7NHN|1|a|C|110
7NHN|1|a|G|111
7NHN|1|a|G|112
7NHN|1|a|G|113
*
7NHN|1|a|C|324
7NHN|1|a|A|325
7NHN|1|a|C|326
*
7NHN|1|a|G|347
7NHN|1|a|A|348
7NHN|1|a|C|349
*
7NHN|1|a|G|360
7NHN|1|a|G|361
7NHN|1|a|C|362
7NHN|1|a|A|363
7NHN|1|a|G|364
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain N
- 50S ribosomal protein L14
- Chain S
- 50S ribosomal protein L19
- Chain q
- 30S ribosomal protein S16
- Chain u
- 30S ribosomal protein S20
Coloring options: