J5_7NRC_002
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7NRC|1|LA|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NRC_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0621
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7NRC|1|LA|G|658
7NRC|1|LA|G|659
7NRC|1|LA|A|660
7NRC|1|LA|G|661
7NRC|1|LA|U|662
7NRC|1|LA|C|663
*
7NRC|1|LA|G|799
7NRC|1|LA|G|800
7NRC|1|LA|A|801
7NRC|1|LA|C|802
*
7NRC|1|LA|G|941
7NRC|1|LA|U|942
7NRC|1|LA|U|943
7NRC|1|LA|C|944
*
7NRC|1|LA|G|1375
7NRC|1|LA|C|1376
*
7NRC|1|LA|G|1431
7NRC|1|LA|C|1432
7NRC|1|LA|A|1433
7NRC|1|LA|G|1434
7NRC|1|LA|A|1435
7NRC|1|LA|U|1436
7NRC|1|LA|C|1437
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lg
- 60S ribosomal protein L32
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