J5_7NRC_005
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7NRC|1|LA|A|2404, 7NRC|1|LA|A|2817, 7NRC|1|LA|U|2978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRC|1|LA|A|2399
7NRC|1|LA|G|2400
7NRC|1|LA|A|2401
7NRC|1|LA|A|2402
7NRC|1|LA|G|2403
7NRC|1|LA|A|2404
7NRC|1|LA|C|2405
7NRC|1|LA|C|2406
*
7NRC|1|LA|G|2815
7NRC|1|LA|G|2816
7NRC|1|LA|A|2817
7NRC|1|LA|U|2818
7NRC|1|LA|A|2819
7NRC|1|LA|A|2820
7NRC|1|LA|C|2821
7NRC|1|LA|U|2822
7NRC|1|LA|G|2823
*
7NRC|1|LA|C|2867
7NRC|1|LA|U|2868
7NRC|1|LA|U|2869
7NRC|1|LA|C|2870
7NRC|1|LA|G|2871
7NRC|1|LA|A|2872
7NRC|1|LA|U|2873
7NRC|1|LA|G|2874
7NRC|1|LA|U|2875
7NRC|1|LA|C|2876
*
7NRC|1|LA|G|2951
7NRC|1|LA|G|2952
7NRC|1|LA|U|2953
7NRC|1|LA|U|2954
7NRC|1|LA|U|2955
7NRC|1|LA|A|2956
7NRC|1|LA|G|2957
*
7NRC|1|LA|U|2975
7NRC|1|LA|A|2976
7NRC|1|LA|G|2977
7NRC|1|LA|U|2978
7NRC|1|LA|U|2979
7NRC|1|LA|U|2980
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LE
- 60S ribosomal protein L3
- Chain LF
- 60S ribosomal protein L4-A
- Chain LL
- 60S ribosomal protein L10
- Chain LR
- 60S ribosomal protein L17-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ld
- 60S ribosomal protein L29
- Chain Ls
- eiF5A
- Chain Sm
- Transfer RNA; tRNA
- Chain Sn
- Transfer RNA; tRNA
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