3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
Length
35 nucleotides
Bulged bases
7NRC|1|S2|A|541, 7NRC|1|S2|A|544
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NRC|1|S2|C|31
7NRC|1|S2|U|32
7NRC|1|S2|U|33
7NRC|1|S2|G|34
7NRC|1|S2|U|35
*
7NRC|1|S2|A|473
7NRC|1|S2|A|474
7NRC|1|S2|A|475
7NRC|1|S2|U|476
7NRC|1|S2|A|477
7NRC|1|S2|A|478
7NRC|1|S2|C|479
*
7NRC|1|S2|G|509
7NRC|1|S2|G|510
7NRC|1|S2|A|511
7NRC|1|S2|A|512
7NRC|1|S2|U|513
7NRC|1|S2|G|514
7NRC|1|S2|A|515
7NRC|1|S2|G|516
*
7NRC|1|S2|C|536
7NRC|1|S2|G|537
7NRC|1|S2|A|538
7NRC|1|S2|G|539
7NRC|1|S2|G|540
7NRC|1|S2|A|541
7NRC|1|S2|A|542
7NRC|1|S2|C|543
7NRC|1|S2|A|544
7NRC|1|S2|A|545
7NRC|1|S2|U|546
*
7NRC|1|S2|A|592
7NRC|1|S2|U|593
7NRC|1|S2|A|594
7NRC|1|S2|G|595

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SW
40S ribosomal protein S9-A
Chain Sc
40S ribosomal protein S23-A
Chain Sg
40S ribosomal protein S30-A

Coloring options:

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