J5_7NRC_009
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7NRC|1|S2|A|93, 7NRC|1|S2|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NRC_009 not in the Motif Atlas
- Homologous match to J5_8P9A_017
- Geometric discrepancy: 0.1049
- The information below is about J5_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NRC|1|S2|C|54
7NRC|1|S2|A|55
7NRC|1|S2|U|56
7NRC|1|S2|G|57
*
7NRC|1|S2|C|90
7NRC|1|S2|G|91
7NRC|1|S2|A|92
7NRC|1|S2|A|93
7NRC|1|S2|U|94
7NRC|1|S2|G|95
7NRC|1|S2|G|96
7NRC|1|S2|C|97
*
7NRC|1|S2|G|386
7NRC|1|S2|A|387
7NRC|1|S2|G|388
*
7NRC|1|S2|C|409
7NRC|1|S2|A|410
7NRC|1|S2|C|411
*
7NRC|1|S2|G|422
7NRC|1|S2|G|423
7NRC|1|S2|C|424
7NRC|1|S2|A|425
7NRC|1|S2|G|426
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain LX
- 60S ribosomal protein L23-A
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sd
- 40S ribosomal protein S24-A
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