3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
7NRC|1|S2|A|93, 7NRC|1|S2|C|424
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7NRC_009 not in the Motif Atlas
Homologous match to J5_8P9A_017
Geometric discrepancy: 0.1049
The information below is about J5_8P9A_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7NRC|1|S2|C|54
7NRC|1|S2|A|55
7NRC|1|S2|U|56
7NRC|1|S2|G|57
*
7NRC|1|S2|C|90
7NRC|1|S2|G|91
7NRC|1|S2|A|92
7NRC|1|S2|A|93
7NRC|1|S2|U|94
7NRC|1|S2|G|95
7NRC|1|S2|G|96
7NRC|1|S2|C|97
*
7NRC|1|S2|G|386
7NRC|1|S2|A|387
7NRC|1|S2|G|388
*
7NRC|1|S2|C|409
7NRC|1|S2|A|410
7NRC|1|S2|C|411
*
7NRC|1|S2|G|422
7NRC|1|S2|G|423
7NRC|1|S2|C|424
7NRC|1|S2|A|425
7NRC|1|S2|G|426

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain LX
60S ribosomal protein L23-A
Chain SS
40S ribosomal protein S4-A
Chain ST
40S ribosomal protein S6-A
Chain SV
40S ribosomal protein S8-A
Chain SW
40S ribosomal protein S9-A
Chain Sd
40S ribosomal protein S24-A

Coloring options:


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