J5_7NRC_012

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUUUGG*CUUUCCUU*GACUUU*AUAGAAUAGG*UGAU

Length

35 nucleotides

Bulged bases

7NRC|1|S2|U|639, 7NRC|1|S2|U|694, 7NRC|1|S2|C|696, 7NRC|1|S2|C|697, 7NRC|1|S2|U|742, 7NRC|1|S2|U|813, 7NRC|1|S2|G|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRC|1|S2|A|636
7NRC|1|S2|C|637
7NRC|1|S2|U|638
7NRC|1|S2|U|639
7NRC|1|S2|U|640
7NRC|1|S2|G|641
7NRC|1|S2|G|642
*
7NRC|1|S2|C|692
7NRC|1|S2|U|693
7NRC|1|S2|U|694
7NRC|1|S2|U|695
7NRC|1|S2|C|696
7NRC|1|S2|C|697
7NRC|1|S2|U|698
7NRC|1|S2|U|699
*
7NRC|1|S2|G|739
7NRC|1|S2|A|740
7NRC|1|S2|C|741
7NRC|1|S2|U|742
7NRC|1|S2|U|743
7NRC|1|S2|U|744
*
7NRC|1|S2|A|807
7NRC|1|S2|U|808
7NRC|1|S2|A|809
7NRC|1|S2|G|810
7NRC|1|S2|A|811
7NRC|1|S2|A|812
7NRC|1|S2|U|813
7NRC|1|S2|A|814
7NRC|1|S2|G|815
7NRC|1|S2|G|816
*
7NRC|1|S2|U|857
7NRC|1|S2|G|858
7NRC|1|S2|A|859
7NRC|1|S2|U|860

Current chains

Chain S2

18S rRNA (1771-MER)

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain SU

40S ribosomal protein S7-A

Chain SX

40S ribosomal protein S11-A

Chain SY

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S22-A