J5_7NRC_013
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
- Length
- 41 nucleotides
- Bulged bases
- 7NRC|1|S2|U|128, 7NRC|1|S2|C|131, 7NRC|1|S2|U|132, 7NRC|1|S2|U|133, 7NRC|1|S2|U|134, 7NRC|1|S2|A|140, 7NRC|1|S2|U|141, 7NRC|1|S2|U|178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRC|1|S2|A|124
7NRC|1|S2|U|125
7NRC|1|S2|A|126
7NRC|1|S2|G|127
7NRC|1|S2|U|128
7NRC|1|S2|U|129
7NRC|1|S2|C|130
7NRC|1|S2|C|131
7NRC|1|S2|U|132
7NRC|1|S2|U|133
7NRC|1|S2|U|134
7NRC|1|S2|A|135
7NRC|1|S2|C|136
7NRC|1|S2|U|137
7NRC|1|S2|A|138
7NRC|1|S2|C|139
7NRC|1|S2|A|140
7NRC|1|S2|U|141
7NRC|1|S2|G|142
7NRC|1|S2|G|143
*
7NRC|1|S2|C|172
7NRC|1|S2|A|173
7NRC|1|S2|U|174
7NRC|1|S2|G|175
7NRC|1|S2|C|176
7NRC|1|S2|U|177
7NRC|1|S2|U|178
7NRC|1|S2|A|179
7NRC|1|S2|A|180
7NRC|1|S2|A|181
7NRC|1|S2|A|182
*
7NRC|1|S2|U|203
7NRC|1|S2|G|204
*
7NRC|1|S2|C|263
7NRC|1|S2|G|264
7NRC|1|S2|A|265
*
7NRC|1|S2|U|289
7NRC|1|S2|G|290
7NRC|1|S2|G|291
7NRC|1|S2|U|292
7NRC|1|S2|U|293
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
Coloring options: