J5_7NWH_003
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GCAAGCCGGA*UUG*UG*CGGACCAGG*CAC
- Length
- 27 nucleotides
- Bulged bases
- 7NWH|1|5|G|3620, 7NWH|1|5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NWH_003 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.5848
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7NWH|1|5|G|2855
7NWH|1|5|C|2856
7NWH|1|5|A|2857
7NWH|1|5|A|2858
7NWH|1|5|G|2859
7NWH|1|5|C|2860
7NWH|1|5|C|2861
7NWH|1|5|G|2862
7NWH|1|5|G|2863
7NWH|1|5|A|2864
*
7NWH|1|5|U|2886
7NWH|1|5|U|2887
7NWH|1|5|G|2888
*
7NWH|1|5|U|3613
7NWH|1|5|G|3614
*
7NWH|1|5|C|3618
7NWH|1|5|G|3619
7NWH|1|5|G|3620
7NWH|1|5|A|3621
7NWH|1|5|C|3622
7NWH|1|5|C|3623
7NWH|1|5|A|3624
7NWH|1|5|G|3625
7NWH|1|5|G|3626
*
7NWH|1|5|C|3835
7NWH|1|5|A|3836
7NWH|1|5|C|3837
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- uL3
- Chain R
- 60S ribosomal protein L19
- Chain V
- eL14
- Chain W
- 60S ribosomal protein L24-like protein
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