J5_7NWH_004
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7NWH|1|5|A|4394, 7NWH|1|5|G|4451, 7NWH|1|5|U|4452, 7NWH|1|5|U|4555, 7NWH|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NWH|1|5|A|3903
7NWH|1|5|G|3904
7NWH|1|5|A|3905
7NWH|1|5|A|3906
7NWH|1|5|G|3907
7NWH|1|5|A|3908
7NWH|1|5|C|3909
7NWH|1|5|C|3910
*
7NWH|1|5|G|4392
7NWH|1|5|G|4393
7NWH|1|5|A|4394
7NWH|1|5|U|4395
7NWH|1|5|A|4396
7NWH|1|5|A|4397
7NWH|1|5|C|4398
7NWH|1|5|U|4399
7NWH|1|5|G|4400
*
7NWH|1|5|C|4444
7NWH|1|5|U|4445
7NWH|1|5|U|4446
7NWH|1|5|C|4447
7NWH|1|5|G|4448
7NWH|1|5|A|4449
7NWH|1|5|U|4450
7NWH|1|5|G|4451
7NWH|1|5|U|4452
7NWH|1|5|C|4453
*
7NWH|1|5|G|4528
7NWH|1|5|G|4529
7NWH|1|5|U|4530
7NWH|1|5|U|4531
7NWH|1|5|U|4532
7NWH|1|5|A|4533
7NWH|1|5|G|4534
*
7NWH|1|5|U|4552
7NWH|1|5|A|4553
7NWH|1|5|G|4554
7NWH|1|5|U|4555
7NWH|1|5|U|4556
7NWH|1|5|U|4557
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain B
- uL3
- Chain C
- uL4
- Chain a
- 60S ribosomal protein L27a
- Chain b
- eL29
Coloring options: