J5_7NWH_009

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUCGCUC*GGGC*GUG*CCG*CGACC

Length

22 nucleotides

Bulged bases

7NWH|1|9|G|126, 7NWH|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWH|1|9|G|123
7NWH|1|9|U|124
7NWH|1|9|C|125
7NWH|1|9|G|126
7NWH|1|9|C|127
7NWH|1|9|U|128
7NWH|1|9|C|129
*
7NWH|1|9|G|183
7NWH|1|9|G|184
7NWH|1|9|G|185
7NWH|1|9|C|186
*
7NWH|1|9|G|213
7NWH|1|9|U|214
7NWH|1|9|G|215
*
7NWH|1|9|C|310
7NWH|1|9|C|311
7NWH|1|9|G|312
*
7NWH|1|9|C|337
7NWH|1|9|G|338
7NWH|1|9|A|339
7NWH|1|9|C|340
7NWH|1|9|C|341

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8