J5_7NWI_003
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7NWI|1|5|G|3620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NWI_003 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1531
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7NWI|1|5|G|2855
7NWI|1|5|C|2856
7NWI|1|5|A|2857
7NWI|1|5|A|2858
7NWI|1|5|G|2859
7NWI|1|5|C|2860
7NWI|1|5|C|2861
7NWI|1|5|G|2862
7NWI|1|5|G|2863
*
7NWI|1|5|U|2887
7NWI|1|5|G|2888
*
7NWI|1|5|U|3613
7NWI|1|5|G|3614
*
7NWI|1|5|C|3618
7NWI|1|5|G|3619
7NWI|1|5|G|3620
7NWI|1|5|A|3621
7NWI|1|5|C|3622
7NWI|1|5|C|3623
7NWI|1|5|A|3624
7NWI|1|5|G|3625
7NWI|1|5|G|3626
*
7NWI|1|5|C|3835
7NWI|1|5|A|3836
7NWI|1|5|C|3837
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- uL3
- Chain R
- 60S ribosomal protein L19
- Chain V
- eL14
- Chain W
- 60S ribosomal protein L24-like protein
Coloring options: