J5_7NWI_006
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 7NWI|1|9|G|589, 7NWI|1|9|A|590, 7NWI|1|9|U|591, 7NWI|1|9|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NWI|1|9|C|30
7NWI|1|9|U|31
7NWI|1|9|U|32
7NWI|1|9|G|33
7NWI|1|9|U|34
*
7NWI|1|9|A|521
7NWI|1|9|A|522
7NWI|1|9|A|523
7NWI|1|9|U|524
7NWI|1|9|A|525
7NWI|1|9|A|526
7NWI|1|9|C|527
*
7NWI|1|9|G|558
7NWI|1|9|G|559
7NWI|1|9|A|560
7NWI|1|9|A|561
7NWI|1|9|U|562
7NWI|1|9|G|563
7NWI|1|9|A|564
7NWI|1|9|G|565
*
7NWI|1|9|C|585
7NWI|1|9|G|586
7NWI|1|9|A|587
7NWI|1|9|G|588
7NWI|1|9|G|589
7NWI|1|9|A|590
7NWI|1|9|U|591
7NWI|1|9|C|592
7NWI|1|9|C|593
7NWI|1|9|A|594
7NWI|1|9|U|595
*
7NWI|1|9|A|641
7NWI|1|9|U|642
7NWI|1|9|A|643
7NWI|1|9|G|644
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain JJ
- 40S ribosomal protein S9
- Chain XX
- Ribosomal protein S23
- Chain ee
- 40S ribosomal protein S30
Coloring options: