J5_7NWT_008
3D structure
- PDB id
- 7NWT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7NWT_008 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0577
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7NWT|1|2|C|36
7NWT|1|2|U|37
7NWT|1|2|G|38
7NWT|1|2|G|39
*
7NWT|1|2|C|403
7NWT|1|2|G|404
7NWT|1|2|U|405
7NWT|1|2|G|406
*
7NWT|1|2|C|436
7NWT|1|2|U|437
7NWT|1|2|U|438
7NWT|1|2|U|439
7NWT|1|2|C|440
7NWT|1|2|A|441
7NWT|1|2|G|442
*
7NWT|1|2|C|492
7NWT|1|2|A|493
7NWT|1|2|G|494
7NWT|1|2|A|495
7NWT|1|2|A|496
7NWT|1|2|G|497
7NWT|1|2|A|498
7NWT|1|2|A|499
7NWT|1|2|G|500
*
7NWT|1|2|C|545
7NWT|1|2|A|546
7NWT|1|2|A|547
7NWT|1|2|G|548
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain BB
- Protein 2A
- Chain CC
- Protein 2A
- Chain i
- 30S ribosomal protein S4
- Chain q
- 30S ribosomal protein S12
Coloring options: