J5_7NWT_009

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7NWT|1|2|A|109, 7NWT|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NWT_009 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.081

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7NWT|1|2|C|58
7NWT|1|2|A|59
7NWT|1|2|A|60
7NWT|1|2|G|61
*
7NWT|1|2|C|106
7NWT|1|2|G|107
7NWT|1|2|G|108
7NWT|1|2|A|109
7NWT|1|2|C|110
7NWT|1|2|G|111
7NWT|1|2|G|112
7NWT|1|2|G|113
*
7NWT|1|2|C|314
7NWT|1|2|A|315
7NWT|1|2|C|316
*
7NWT|1|2|G|337
7NWT|1|2|A|338
7NWT|1|2|C|339
*
7NWT|1|2|G|350
7NWT|1|2|G|351
7NWT|1|2|C|352
7NWT|1|2|A|353
7NWT|1|2|G|354

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20