J5_7NWW_008

3D structure

PDB id

7NWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7NWW_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.066

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7NWW|1|2|C|36
7NWW|1|2|U|37
7NWW|1|2|G|38
7NWW|1|2|G|39
*
7NWW|1|2|C|403
7NWW|1|2|G|404
7NWW|1|2|U|405
7NWW|1|2|G|406
*
7NWW|1|2|C|436
7NWW|1|2|U|437
7NWW|1|2|U|438
7NWW|1|2|U|439
7NWW|1|2|C|440
7NWW|1|2|A|441
7NWW|1|2|G|442
*
7NWW|1|2|C|492
7NWW|1|2|A|493
7NWW|1|2|G|494
7NWW|1|2|A|495
7NWW|1|2|A|496
7NWW|1|2|G|497
7NWW|1|2|A|498
7NWW|1|2|A|499
7NWW|1|2|G|500
*
7NWW|1|2|C|545
7NWW|1|2|A|546
7NWW|1|2|A|547
7NWW|1|2|G|548

Current chains

Chain 2

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12