J5_7O1A_002

3D structure

PDB id

7O1A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7O1A_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0677

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7O1A|1|AA|C|36
7O1A|1|AA|U|37
7O1A|1|AA|G|38
7O1A|1|AA|G|39
*
7O1A|1|AA|C|403
7O1A|1|AA|G|404
7O1A|1|AA|U|405
7O1A|1|AA|G|406
*
7O1A|1|AA|C|436
7O1A|1|AA|U|437
7O1A|1|AA|U|438
7O1A|1|AA|U|439
7O1A|1|AA|C|440
7O1A|1|AA|A|441
7O1A|1|AA|G|442
*
7O1A|1|AA|C|492
7O1A|1|AA|A|493
7O1A|1|AA|G|494
7O1A|1|AA|A|495
7O1A|1|AA|A|496
7O1A|1|AA|G|497
7O1A|1|AA|A|498
7O1A|1|AA|A|499
7O1A|1|AA|G|500
*
7O1A|1|AA|C|545
7O1A|1|AA|A|546
7O1A|1|AA|A|547
7O1A|1|AA|G|548

Current chains

Chain AA

Ribosomal RNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12