J5_7O1C_004

3D structure

PDB id

7O1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7O1C|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7O1C_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.057

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7O1C|1|BA|C|47
7O1C|1|BA|G|48
7O1C|1|BA|A|49
7O1C|1|BA|U|50
7O1C|1|BA|G|51
7O1C|1|BA|A|52
7O1C|1|BA|A|53
7O1C|1|BA|G|54
*
7O1C|1|BA|C|116
7O1C|1|BA|G|117
7O1C|1|BA|A|118
7O1C|1|BA|A|119
7O1C|1|BA|U|120
7O1C|1|BA|G|121
*
7O1C|1|BA|C|130
7O1C|1|BA|A|131
*
7O1C|1|BA|U|148
7O1C|1|BA|A|149
7O1C|1|BA|U|150
*
7O1C|1|BA|A|176
7O1C|1|BA|G|177
7O1C|1|BA|G|178

Current chains

Chain BA

Ribosomal RNA 23S

Nearby chains

Chain B2

50S ribosomal protein L34