J5_7O5B_001

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUGG*CGUG*CUGUUG*CCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O5B|1|A|C|38
7O5B|1|A|U|39
7O5B|1|A|G|40
7O5B|1|A|G|41
*
7O5B|1|A|C|411
7O5B|1|A|G|412
7O5B|1|A|U|413
7O5B|1|A|G|414
*
7O5B|1|A|C|444
7O5B|1|A|U|445
7O5B|1|A|G|446
7O5B|1|A|U|447
7O5B|1|A|U|448
7O5B|1|A|G|449
*
7O5B|1|A|C|502
7O5B|1|A|C|503
7O5B|1|A|A|504
7O5B|1|A|G|505
7O5B|1|A|A|506
7O5B|1|A|A|507
7O5B|1|A|A|508
7O5B|1|A|G|509
*
7O5B|1|A|C|554
7O5B|1|A|A|555
7O5B|1|A|A|556
7O5B|1|A|G|557

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12