J5_7O5B_003

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7O5B|1|X|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7O5B_003 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1026

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7O5B|1|X|C|47
7O5B|1|X|G|48
7O5B|1|X|A|49
7O5B|1|X|U|50
7O5B|1|X|G|51
7O5B|1|X|A|52
7O5B|1|X|A|53
7O5B|1|X|G|54
*
7O5B|1|X|C|115
7O5B|1|X|G|116
7O5B|1|X|A|117
7O5B|1|X|A|118
7O5B|1|X|U|119
7O5B|1|X|G|120
*
7O5B|1|X|C|129
7O5B|1|X|A|130
*
7O5B|1|X|U|149
7O5B|1|X|A|150
7O5B|1|X|U|151
*
7O5B|1|X|A|178
7O5B|1|X|A|179
7O5B|1|X|G|180

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 2

50S ribosomal protein L34

Chain s

50S ribosomal protein L23