J5_7O5B_006
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7O5B|1|X|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O5B_006 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1153
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7O5B|1|X|C|628
7O5B|1|X|G|629
7O5B|1|X|A|630
7O5B|1|X|G|631
7O5B|1|X|U|632
7O5B|1|X|U|633
*
7O5B|1|X|A|715
7O5B|1|X|G|716
7O5B|1|X|A|717
7O5B|1|X|C|718
*
7O5B|1|X|G|856
7O5B|1|X|U|857
7O5B|1|X|U|858
7O5B|1|X|C|859
*
7O5B|1|X|G|1236
7O5B|1|X|C|1237
*
7O5B|1|X|G|1290
7O5B|1|X|A|1291
7O5B|1|X|G|1292
7O5B|1|X|A|1293
7O5B|1|X|A|1294
7O5B|1|X|U|1295
7O5B|1|X|G|1296
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain b
- 50S ribosomal protein L4
- Chain i
- 50S ribosomal protein L15
- Chain n
- 50S ribosomal protein L20
- Chain o
- 50S ribosomal protein L21
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