J5_7O5B_008
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 7O5B|1|X|A|2091, 7O5B|1|X|A|2477, 7O5B|1|X|U|2478, 7O5B|1|X|U|2614, 7O5B|1|X|U|2638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O5B|1|X|G|2086
7O5B|1|X|A|2087
7O5B|1|X|A|2088
7O5B|1|X|A|2089
7O5B|1|X|G|2090
7O5B|1|X|A|2091
7O5B|1|X|C|2092
7O5B|1|X|C|2093
*
7O5B|1|X|G|2475
7O5B|1|X|G|2476
7O5B|1|X|A|2477
7O5B|1|X|U|2478
7O5B|1|X|A|2479
7O5B|1|X|A|2480
7O5B|1|X|C|2481
7O5B|1|X|A|2482
*
7O5B|1|X|U|2529
7O5B|1|X|C|2530
7O5B|1|X|G|2531
7O5B|1|X|A|2532
7O5B|1|X|U|2533
7O5B|1|X|G|2534
7O5B|1|X|U|2535
*
7O5B|1|X|G|2612
7O5B|1|X|U|2613
7O5B|1|X|U|2614
7O5B|1|X|C|2615
7O5B|1|X|A|2616
7O5B|1|X|G|2617
*
7O5B|1|X|C|2635
7O5B|1|X|G|2636
7O5B|1|X|G|2637
7O5B|1|X|U|2638
7O5B|1|X|C|2639
7O5B|1|X|C|2640
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain U
- Transfer RNA; tRNA
- Chain Z
- 50S ribosomal protein L2
- Chain a
- 50S ribosomal protein L3
- Chain b
- 50S ribosomal protein L4
- Chain h
- MifM-stalling construct
- Chain i
- 50S ribosomal protein L15
- Chain j
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L27
Coloring options: