J5_7O7Y_002

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUA(OMG)

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Y|1|A2|C|30
7O7Y|1|A2|U|31
7O7Y|1|A2|U|32
7O7Y|1|A2|G|33
7O7Y|1|A2|PSU|34
*
7O7Y|1|A2|A|522
7O7Y|1|A2|A|523
7O7Y|1|A2|A|524
7O7Y|1|A2|U|525
7O7Y|1|A2|A|526
7O7Y|1|A2|A|527
7O7Y|1|A2|C|528
*
7O7Y|1|A2|G|559
7O7Y|1|A2|G|560
7O7Y|1|A2|A|561
7O7Y|1|A2|A|562
7O7Y|1|A2|U|563
7O7Y|1|A2|G|564
7O7Y|1|A2|A|565
7O7Y|1|A2|G|566
*
7O7Y|1|A2|C|586
7O7Y|1|A2|G|587
7O7Y|1|A2|A|588
7O7Y|1|A2|G|589
7O7Y|1|A2|G|590
7O7Y|1|A2|A2M|591
7O7Y|1|A2|U|592
7O7Y|1|A2|C|593
7O7Y|1|A2|C|594
7O7Y|1|A2|A|595
7O7Y|1|A2|U|596
*
7O7Y|1|A2|A|642
7O7Y|1|A2|U|643
7O7Y|1|A2|A|644
7O7Y|1|A2|OMG|645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23