J5_7O7Y_007
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7O7Y|1|B5|G|3352, 7O7Y|1|B5|G|3357
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O7Y_007 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0982
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Y|1|B5|G|2698
7O7Y|1|B5|C|2699
7O7Y|1|B5|A|2700
7O7Y|1|B5|A|2701
7O7Y|1|B5|G|2702
7O7Y|1|B5|C|2703
7O7Y|1|B5|OMC|2704
7O7Y|1|B5|G|2705
7O7Y|1|B5|G|2706
*
7O7Y|1|B5|U|2730
7O7Y|1|B5|G|2731
*
7O7Y|1|B5|U|3345
7O7Y|1|B5|G|3346
*
7O7Y|1|B5|C|3350
7O7Y|1|B5|G|3351
7O7Y|1|B5|G|3352
7O7Y|1|B5|A|3353
7O7Y|1|B5|C|3354
7O7Y|1|B5|C|3355
7O7Y|1|B5|A|3356
7O7Y|1|B5|G|3357
7O7Y|1|B5|G|3358
*
7O7Y|1|B5|C|3567
7O7Y|1|B5|A|3568
7O7Y|1|B5|C|3569
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- Ribosomal protein L3
- Chain BR
- 60S ribosomal protein L19
- Chain BV
- Ribosomal protein L23
- Chain BW
- eL24
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