J5_7O7Y_008
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGAAGACCC*G(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 42 nucleotides
- Bulged bases
- 7O7Y|1|B5|A|3640, 7O7Y|1|B5|A|4140, 7O7Y|1|B5|G|4197, 7O7Y|1|B5|U|4301, 7O7Y|1|B5|U|4302
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Y|1|B5|A|3635
7O7Y|1|B5|G|3636
7O7Y|1|B5|A|3637
7O7Y|1|B5|A|3638
7O7Y|1|B5|G|3639
7O7Y|1|B5|A|3640
7O7Y|1|B5|C|3641
7O7Y|1|B5|C|3642
7O7Y|1|B5|C|3643
*
7O7Y|1|B5|G|4137
7O7Y|1|B5|OMG|4138
7O7Y|1|B5|G|4139
7O7Y|1|B5|A|4140
7O7Y|1|B5|U|4141
7O7Y|1|B5|A|4142
7O7Y|1|B5|A|4143
7O7Y|1|B5|C|4144
7O7Y|1|B5|U|4145
7O7Y|1|B5|G|4146
*
7O7Y|1|B5|C|4190
7O7Y|1|B5|U|4191
7O7Y|1|B5|U|4192
7O7Y|1|B5|5MC|4193
7O7Y|1|B5|G|4194
7O7Y|1|B5|A|4195
7O7Y|1|B5|U|4196
7O7Y|1|B5|G|4197
7O7Y|1|B5|U|4198
7O7Y|1|B5|C|4199
*
7O7Y|1|B5|G|4274
7O7Y|1|B5|G|4275
7O7Y|1|B5|UR3|4276
7O7Y|1|B5|U|4277
7O7Y|1|B5|PSU|4278
7O7Y|1|B5|A|4279
7O7Y|1|B5|G|4280
*
7O7Y|1|B5|PSU|4298
7O7Y|1|B5|A|4299
7O7Y|1|B5|G|4300
7O7Y|1|B5|U|4301
7O7Y|1|B5|U|4302
7O7Y|1|B5|U|4303
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain BA
- Ribosomal protein uL2
- Chain BB
- Ribosomal protein L3
- Chain BC
- 60S ribosomal protein L4
- Chain BI
- 60S ribosomal protein L10
- Chain BK
- Replicase polyprotein 1ab
- Chain BP
- uL22
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
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