J5_7O7Y_009
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7O7Y|1|B5|G|3654, 7O7Y|1|B5|A|4122, 7O7Y|1|B5|G|4123, 7O7Y|1|B5|A|4124, 7O7Y|1|B5|A|4125
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7O7Y_009 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3384
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7O7Y|1|B5|PSU|3652
7O7Y|1|B5|U|3653
7O7Y|1|B5|G|3654
7O7Y|1|B5|A|3655
*
7O7Y|1|B5|U|3934
7O7Y|1|B5|U|3935
7O7Y|1|B5|U|3936
7O7Y|1|B5|G|3937
*
7O7Y|1|B5|C|3950
7O7Y|1|B5|A|3951
*
7O7Y|1|B5|OMU|3973
7O7Y|1|B5|OMG|3974
*
7O7Y|1|B5|C|4121
7O7Y|1|B5|A|4122
7O7Y|1|B5|G|4123
7O7Y|1|B5|A|4124
7O7Y|1|B5|A|4125
7O7Y|1|B5|A|4126
7O7Y|1|B5|A|4127
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AI
- E-site tRNA
- Chain AT
- Transfer RNA; tRNA
- Chain BA
- Ribosomal protein uL2
- Chain BN
- Ribosomal protein L15
- Chain BQ
- Ribosomal Protein eL18
- Chain BT
- eL21
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- eL42
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