J5_7O7Z_004

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

7O7Z|1|A2|G|126, 7O7Z|1|A2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|A2|G|123
7O7Z|1|A2|U|124
7O7Z|1|A2|C|125
7O7Z|1|A2|G|126
7O7Z|1|A2|C|127
7O7Z|1|A2|U|128
7O7Z|1|A2|C|129
*
7O7Z|1|A2|G|183
7O7Z|1|A2|G|184
7O7Z|1|A2|G|185
*
7O7Z|1|A2|U|214
7O7Z|1|A2|G|215
*
7O7Z|1|A2|C|311
7O7Z|1|A2|C|312
7O7Z|1|A2|G|313
*
7O7Z|1|A2|C|338
7O7Z|1|A2|G|339
7O7Z|1|A2|A|340
7O7Z|1|A2|C|341
7O7Z|1|A2|C|342

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8